Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015811093.1_cds_XP_016496549.1_10759
CDS Infomation

[gene=LOC107815480] [db_xref=GeneID:107815480] [protein=autophagy-related protein 16-like] [protein_id=XP_016496549.1] [location=complement(join(38717..39739,41039..41234,41575..41756,43861..43987,44096..44097))] [gbkey=CDS]
Sequence

ATGTCATACGAAGAAGTTGCTGTTGGAGCAATTAGGGATGCATTAAAGGCTCTAAGAAAG
CGGCATTTAGTGGAGGAAGGGGCTCATGCCCCTGCTTTCCTTGCCCTCACTAGGCCTCTC
GTTTTGCAGGGTTCAGAGTGGAAAGAGAAAGCTGAAAATCTTGAAGTTGAACTTCAGCAA
TGTTACAAAGCTCAAGCACGACTGTCAGAGCAGCTTGTGGTGGAAGTAGCTGAATCAAGA
GCTTCAAAATCTTTAGTTCAAGAGAAGGAAGCTATCATTACTGACCTTCAGAATGAGCTA
AACGAATCAAGGGATGAATGTTCTCGTTTAACTGAACTTCTCACAGAAAAGACTAAAGCT
TTGGAATTGATTATGGGTGAGCACCAGGAGCTTAAAGCACAACTTGAAGCAATGACTCTG
AGAGCAAACAATGCTGAGGCAGAAAATAAAACGTTGGTTGATCGTTGGATGCTGCAGAAG
ATGCAGGATGCTGAGCGCCTTAACGAGGCTAATGCTCTCTACGAAGATATGCTGGATAAG
GTCAAGGCCACCAGTATAGAAAAACTTGCTCGTCAACAAGTGGATGGTGTGGTCCGCCAA
AGTGAAGATGGTGCAAACTTTTATGCAGAATCTTCCCTTCCTAGTATATGCAAACAAAGA
ATCCCCGCCCATGATGGTGGATGTGCCTCGATTCTTTTTGAGTATAACTCCAGTAAATTG
ATAAGCGGTGGGCAGGACCGGGCAATTAAAATGTGGGATACTACAAGTGGATCATTAAGC
AGCAGTCTTTACGGTTGTCTGGGTTCTGTCCTTGATCTTTCCATTACACATGATAACAAA
TACATCATTGCAGCAAGTAGTTCAAATAACTTGTATGTGTGGGATGCAAATTCAGGCAGG
ATACGACATACTCTTACTGGGCATGTAGACAAAGTTTGTGCTGTAGACGTGAGCAAATTT
TCAAGTCGATACGTGGTGAGTGCTGCGTATGATCGTACCATAAAAATTTGGGATCTGCAG
AAGGGTTACTGTACTAACACTATTATCTTCCACAGTAACTGTAATAGCCTTTCGTTTAGC
ATGGATGGCCTGACCATTTGTTCCGGTCATGTCGATGGGAGTCTTAGATTATGGGATATT
CAGACAGGGAAGCTTCTGAGTGAAGTTGCTGCACATTCACAGGCTGTTACATCAGTTTCA
CTCTCTCGAAATGGAAATGTAATATTAACCAGTGGGAGAGACAACTTGCACAATCTATTT
GATATTCGTACCCTTGAAATTTGTGGCACTTTCAGAGCGAATGAAAATCGAGTTGCATCT
AATTGGAGTCGTTCCTGTATCAGTCCAGATGACAGTTATGTTGCTTCTGGTTCTGTTGAT
GGATCTGTTCATATTTGGTCAGTATCAAACACTAAAATGGTAAGCACTTTGAAAGAACAC
ACGGCCCCTGTTCTATGTTGTTCATGGAGTGGTTTTGGTAAACCTCTGGCTACCTCGGAT
AAGAGTGGAATCATATGTATTTGGTCATAA

Peptide Sequence

PEP ID

XP_016496549.1
PEP Infomation

PREDICTED: autophagy-related protein 16-like [Nicotiana tabacum]
Sequence

MSYEEVAVGAIRDALKALRKRHLVEEGAHAPAFLALTRPLVLQGSEWKEKAENLEVELQQ
CYKAQARLSEQLVVEVAESRASKSLVQEKEAIITDLQNELNESRDECSRLTELLTEKTKA
LELIMGEHQELKAQLEAMTLRANNAEAENKTLVDRWMLQKMQDAERLNEANALYEDMLDK
VKATSIEKLARQQVDGVVRQSEDGANFYAESSLPSICKQRIPAHDGGCASILFEYNSSKL
ISGGQDRAIKMWDTTSGSLSSSLYGCLGSVLDLSITHDNKYIIAASSSNNLYVWDANSGR
IRHTLTGHVDKVCAVDVSKFSSRYVVSAAYDRTIKIWDLQKGYCTNTIIFHSNCNSLSFS
MDGLTICSGHVDGSLRLWDIQTGKLLSEVAAHSQAVTSVSLSRNGNVILTSGRDNLHNLF
DIRTLEICGTFRANENRVASNWSRSCISPDDSYVASGSVDGSVHIWSVSNTKMVSTLKEH
TAPVLCCSWSGFGKPLATSDKSGIICIWS

Transcript Sequence

Gene sequence data has not been registered.